Matrix: Pajek/yeast
Description: Pajek network: yeast protein interaction network
(undirected graph drawing) |
Matrix properties | |
number of rows | 2,361 |
number of columns | 2,361 |
nonzeros | 13,828 |
# strongly connected comp. | 101 |
explicit zero entries | 0 |
nonzero pattern symmetry | symmetric |
numeric value symmetry | symmetric |
type | binary |
structure | symmetric |
Cholesky candidate? | no |
positive definite? | no |
author | S. Sun, L. Ling, N. Zhang, G. Li, R. Chen |
editor | V. Batagelj |
date | 2003 |
kind | undirected graph |
2D/3D problem? | no |
Additional fields | size and type |
PIN_class | full 2361-by-1 |
nodename | full 2361-by-154 |
Notes:
------------------------------------------------------------------------------ Pajek network converted to sparse adjacency matrix for inclusion in UF sparse matrix collection, Tim Davis. For Pajek datasets, See V. Batagelj & A. Mrvar, http://vlado.fmf.uni-lj.si/pub/networks/data/. ------------------------------------------------------------------------------ Yeast protein interaction / long names --------------------------------------- Dongbo Bu, etal.: Topological structure analysis of the protein-protein interaction network in budding yeast. Nucleic Acids Research, 2003, Vol. 31, No. 9 2443-2450 http://www.bioinfo.org.cn/PIN/ http://www.imb-jena.de/jcb/ppi/PPI_PDF_free/bu2003.pdf transformed in Pajek format: V. Batagelj, 25. July 2003 ----- Yeast protein interaction / PIN class ------------------------------------- Dongbo Bu, etal.: Topological structure analysis of the protein-protein interaction network in budding yeast. Nucleic Acids Research, 2003, Vol. 31, No. 9 2443-2450 http://www.bioinfo.org.cn/PIN/ transformed in Pajek format: V. Batagelj, 25. July 2003 PIN class encoding: 1-T, 2-M, 3-U, 4-C, 5-F, 6-P, 7-G, 8-D, 9-O, 10-E, 11-R, 12-B, 13-A -----
SVD-based statistics: | |
norm(A) | 19.4861 |
min(svd(A)) | 7.18759e-41 |
cond(A) | 2.71108e+41 |
rank(A) | 1,644 |
null space dimension | 717 |
full numerical rank? | no |
singular value gap | 1.7232e+12 |
singular values (MAT file): | click here |
SVD method used: | s = svd (full (A)) ; |
status: | ok |
For a description of the statistics displayed above, click here.
Maintained by Tim Davis, last updated 12-Mar-2014.
Matrix pictures by cspy, a MATLAB function in the CSparse package.
Matrix graphs by Yifan Hu, AT&T Labs Visualization Group.