Matrix: McRae/ecology1
Description: circuitscape: circuit theory applied to animal/gene flow. B. McRae, UCSB
(undirected graph drawing) |
Matrix properties | |
number of rows | 1,000,000 |
number of columns | 1,000,000 |
nonzeros | 4,996,000 |
structural full rank? | yes |
structural rank | 1,000,000 |
# of blocks from dmperm | 1 |
# strongly connected comp. | 1 |
explicit zero entries | 0 |
nonzero pattern symmetry | symmetric |
numeric value symmetry | symmetric |
type | real |
structure | symmetric |
Cholesky candidate? | yes |
positive definite? | no |
author | B. McRae |
editor | T. Davis |
date | 2008 |
kind | 2D/3D problem |
2D/3D problem? | yes |
Notes:
Landscape ecology problem, using electrical network theory to model animal movement an gene flow. The McRae/ecology1 matrix comes from a 2D, 1000-by-1000 mesh (5 pt stencil). It is an ill-conditioned symmetric indefinite matrix. Source: Brad McRae, National Center for Ecological Analysis and Synthesis Santa Barbara, CA.
Ordering statistics: | result |
nnz(chol(P*(A+A'+s*I)*P')) with AMD | 44,674,783 |
Cholesky flop count | 1.8e+10 |
nnz(L+U), no partial pivoting, with AMD | 88,349,566 |
nnz(V) for QR, upper bound nnz(L) for LU, with COLAMD | 74,067,950 |
nnz(R) for QR, upper bound nnz(U) for LU, with COLAMD | 135,597,872 |
For a description of the statistics displayed above, click here.
Maintained by Tim Davis, last updated 12-Mar-2014.
Matrix pictures by cspy, a MATLAB function in the CSparse package.
Matrix graphs by Yifan Hu, AT&T Labs Visualization Group.