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04-17-2007 |
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We will not have lecture on Thursday (April 19th). Instead, I will hold
2hrs office hour on Thursday for discussing the group project work.
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For the final presentation:
- You must present your complete work
- Peer review and comments will give to the other team at the end of
the presentation.
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04-10-2007 |
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03-20-2007 |
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The Schedule page has been updated, including all the papers which will
be discussed for the rest of this semester
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02-12-2007 |
- Notes on the Dynamic Programming:
- Chapter 15, Introduction to Algorithms, written by T. H.
Cormen et al. Towards the end of this chapter, the Longest
Common Subsequence (LCS) and Edit distance problems (and
solutions), which closely relate to the two sequences alignment,
were discussed
- There are also many online notes on Dynamic Programming such
as:
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01-31-2007 |
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Here are two papers discussing about the role of complexes in biology
and why we want to study the pooling designs on complexes:
- Leonard Guarente, Transcriptional Coactivators in Yeast and
Beyond,
Trends Biochem Sci. 1995 Dec;20(12):517-21
- James P. J. Chong, Pia Thommes, and J. Julian
Blow, The role of MCM/P1 proteins in licensing of DNA replication,
TIBS, March 1996
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On a historical note, the complex model (in pooling design) was first
introduced by Torney (see David C. Torney, Sets Pooling Designs, Annals
of Combinatorics, 1999.) Since the molecules of biological cells are
being identified, but it it remains a challenge to understand how they
interact and cooperate to produce various attributes (complexes) of
biological cells. Examples of such complexes are presented in the above
two papers.
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01-22-2007 |
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Due to my sickness, the office hour and lectures on Jan 23 will be
cancelled. Hence I need to slightly change the schedule this week as
follows:
- No class on Jan 23
- We will have lecture on Jan 25 (Thursday)
- Please submit your review report on prof. Hwang's paper on
Thursday
- After the lecture, we will discuss the project proposal ideas
during my office hour on Thursday. I will meet Team 1 in the first 30
mins and Team 2 in the second half. Please let me know via email if
either teams has a time conflict.
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01-18-2007 |
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We have formed two teams. Team member information can be found at the
Team Info page.
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On next Tuesday, you need to submit the first review report on Hwang
paper. Look at the Schedule page for the paper. For the format of the
review report, take a look at the Syllabus page.
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01-09-2007 |
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Welcome to CAP5515. Enjoy and have fun learning!
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