Projects for CAP 5510 - Bioinformatics, Fall 2016



Team Project Title/Page Presentation Date
Deepak Addepalli, Chanikya Chandra Mohan Koniyala, Venkata Satya Sai Prithvi Monangi Implementation and Analysis of different Algorithms to find Tandem Repeats.
Amit Kumar Agarwal, Sreeharsha Reddy Thodimi, Ritika Ahuja Protein Structure Prediction Using Artificial Neural Network (ANN).
Divya Awatramani Implementing a method for motif identification in a set of RNA sequence by using the swarm optimization technique and also MIA (Motif Identification Algorithm).
Siyu Bian, Yunze Li, Xiaohan Wang, Herong Yang Comparison of Clustering Methods in Microarray Data Analysis Tools.
Anurag Bihani, Salman Khan, Abhineet Kulkarni BioPhyle: An interactive approach to learn about GapsMis Sequence Alignment Algorithm.
Timmy Chandy Compare & Contrast phylogenetic tree creation methods.
Prateek Jain, Davuluri Naga Samantha Implementation of Phylogenetic Tree Construction Algorithm.
Aditya Hegde, Kumar Rohit Malhotra, Pranav Goswami Study and comparison of algorithms for cancer prediction using gene expression data.
Vivek Goyal, Adhiraj Nakhe, Debarshi Mitra, Nishant Varma Implementation of Multiple Sequence Alignment using Genetic Algorithm.
Chaitanya Kulkarni, Unmey Mahaddalkar, Parth Rampal Implementation of Efficient Motif Finding Algorithm for Large Alphabet Inputs.
Mizuki Miyatake Exploring Genetic Origin of Allergic Diseases.
Paul Nickerson Improving Microarray Time Series Classification with Multi-Task Gaussian Processes.
VenkatCharan Saginam, Sai Naveen Rachakonda, Junrui Lin Study, Evaluation and Comparison of Phylogenetic tree Construction Methods.
Prashant Brahme, Soumya Sen, Akshay Sharma, Sanchit Sharma A Comparative Study of BWA Algorithms for Sequence Alignment.
Kunal Bajaj, Vikaasa Ramdas Thandu Venkat Kumar, Sanjana Shashidhar Predicting RNA secondary structure using k-nearest neighbor algorithm.
Gaurav Singh,Nikunj Vats Survey of Next Generation Sequencing genome assembly evaluation techniques.
Riddhima Arora, Yash Sinha Predict Cysteine S-Nitrosylation Sites in Proteins.
Minhazul Islam Sk Prediction of Secondary Structure: A Mixture of Support Vector Machine and Logistic Regression Approach.
Devansh Soni, Jenil Shah, Prateek Joshi Analysis and Comparison of Multiple Sequence Alignment Algorithms - CLUSTAL, MUSCLE and T-Coffee.
Nikhil Tiware, Chinmay Kelkar, Ameya Chikodi Efficient counting of k-mers in DNA sequences using a bloom filter.
Shuyang Wu, Gengyu Liu Analysis and Evaluation of Multiple Sequence Alignment Algorithms.
Hanwei Wang, He Zhao, Bingran Li Comparison and analysis of various MSA (Multiple Sequence Alignment) development tools.
Wei Zhao, Jialin Zhang Performance Comparison in Different Multiple Sequence Alignments.

Tamer Kahveci