Projects for CAP 5510 - Bioinformatics, Fall 2015



Team Project Title/Page Presentation Date
Terek Arce A method for analyzing numerical stability of genetic classifiers. Nov 30th, 1:55-2:45, CISE305
Samskruthi Reddy Padigepati, Niharika Vithala, Pradeep Kumar Goudagunta Comparision Of De Novo Graph Algorithms For Next Generation Sequence Assembly Nov 30th, 1:55-2:45, CISE305
Xiaohan Song Efficient MEM Algorithm Implementation Dec 2nd, 1:55-2:45, CISE305
Sushma Pathuri, Jerry Raj Pushparaj, Amitabh Suman, Drumil Deshpande Study and Comparison of Multiple Sequence Alignment Algorithms and Protein Structure Prediction using Comparative Modeling Dec 2nd, 1:55-2:45, CISE305
Harsh Kothari, Mahesh Kumar Mahadev Analyzing Phylogenetic Tree Construction methods Dec 2nd, 1:55-2:45, CISE305
Aisharjya Sarkar, Deepa Narain, Namrata Choudhury, Neha Singh A survey of maximum likelihood based phylogenetic tree construction softwares Dec 4th, 12:50-1:40, CISE122
Omeed Familie, Sanjay Nair, Alyson Listhaus, Karishma Gupta Sequence Alignment Teaching Tool Dec 4th, 12:50-1:40, CISE122
Keke Zhai, Xinyin Zhang Distinguish Cancer Patience with Healthy Person Based on Genetic Correlation Dec 4th, 12:50-1:40, CISE122
Matthew Collins iDigBio Dec 7th, 12:50-1:40, CISE122
Hetong Li, Yao Lin, Ziqi Zhang Exploring SNP-Pair Influence on Gene Expression Intensity Dec 7th, 12:50-1:40, CISE122
Shantanu Godbole, Pratul Baheti Establishing Relationships Between Various Gene Networks Dec 7th, 12:50-1:40, CISE122
Siddharth Phadnis,Jingcong Wang,Shuyi Shang Performance Analysis of Different Multiple Sequence Alignment tools Dec 7th, 1:55-2:45, CISE305
Sumith Chandra Reddy Nimmala, Goutham Kumar Reddy Regatte, Dushyanth Nagaraju, Sunid Dabadi Implementation and Analysis of Planted Motif Search Algorithms Dec 7th, 1:55-2:45, CISE305
Sebo Kim NBC based on non-linearly correlated neighbors with advanced feature selection for predicting cancer drug sensitivity Dec 7th, 1:55-2:45, CISE305
David Kapalko Implementation of Protein Structure Prediction using an Elastic Net Algorithm Dec 9th, 12:50-1:40, CISE122
Michael Strickland Comparison of k-means clustering, SiMM-TS, and DynaMiteC algorithms used to detect clustering in gene expression data Dec 9th, 12:50-1:40, CISE122
Giridhar Ganapavarapu, Shilpa Chandana, Sirivella Ananda Kishore Implementation of Faster Algorithm for Simultaneous Alignment and Folding of RNA Dec 9th, 12:50-1:40, CISE122
Pramit Dutta, Kingshuk Mukherjee, Bijoykrishna Saha Prediction of Motif Frequency in a Dynamic Biological Network Topology Dec 9th, 1:55-2:45, CISE305
Mrignayni Chhotwani, Sarath Francis, Abhishek Pal Comparison of different phylogenetic tree generation methods Dec 9th, 1:55-2:45, CISE305
Hemanth Pinaka, Sai Vishnu Teja Vempali Implementation of Phylogenetic Tree Construction Algorithms based on Minimal Absent Words Dec 9th, 1:55-2:45, CISE305
Ramiya Ranjan Dash, Juliet Viswanathan, Rahul Mehta Research and implementation of the Random walk approach and other modularity based algorithm for scaling up to deal with larger networks Dec 10th, 1:00-3:00, CISE305
Gokul Palwe, Priti Changlani, Sahil Pratap, Soham Panigrahi Implementation of AMDILM (An Algorithm for Motif Discovery with Iteration on Lengths of Motifs) Dec 10th, 1:00-3:00, CISE305
Abhishek Banthia Implementation of Protein Motif Search Pruning Algorithm Dec 10th, 1:00-3:00, CISE305
Zhongyan Qiu, Daoyu Tu Removing Sequential Bottlenecks in Analysis of Next-Generation Sequencing Data Dec 10th, 1:00-3:00, CISE305
Andrew Asp OpenCL-MEME (Multiple EM for Motif Elicitation)
Sarath Francis, Mrignayni Chhotwani, Abhishek Pal Comparison of different phylogenetic tree generation methods
Joel Vega Estimating Phylogenies Using Six Different Methods
Yanjin Wang Organizing Lung Cancer Knowledge by Clustering PubMed Citation

Tamer Kahveci