Projects for CAP 5510 - Bioinformatics, Fall 2012

The project presentations will be held in class (during class hour).

Team Project Title/Page Presentation Date
Rishi Pathak Constructing index structures of biological sequence using Hadoop MapReduce. 11/26/12 (Monday)
Ankush Dharkar Analysis of High-Speed Multiple Sequence Alingment of Amino Acids 11/26/12 (Monday)
Ankit Baderiya, Sayantani Chakraborty Comparison of Various Motif Detection Algorithms in DNA Sequences 11/28/12 (Wednesday) - rescheduled to 12/03/12 @ 2 PM, Room 305.
Michael Leonard A Comparison of Current De Novo Genome Assemblers 11/28/12 (Wednesday)
Ryan Cobb Finding Maximum Frequent Agreement SubTrees (MFASTs) in sets of large Multiply-Labeled Phylogenetic Trees 11/30/12 (Friday)
Rohit Singh Classification of Protein Structural Class with Rough Sets 11/30/12 (Friday)
Pengfei Li, Wei Zhang, Yuqing Yao A Survey of Template-Based Modeling Protein Tertiary Structure Predication Software 12/03/12 (Monday)
Sahil Puri Scaling the Process of Finding MFAST's 12/03/12 (Monday)
Vladimir Stozhkov, Massimiliano S. Tagliamonte Comparing new approaches to DNA sequencing for different algorithms and genomes. 12/05/12 (Wednesday)
Yipu Miao, Chenchao Wei Accelerate of Aligning Metabolic Pathway With Subnet Mapping on Graphics Process Units 12/05/12 (Wednesday) -- during office hour
Prerna Dogra, Maitreyee Saikia Multiple Sequence Alignment -- A Survey on different MSA tools and their performance analysis EDGE - done
Sekou Batchelor A Comparison of Computational Approaches for Multiple Sequence Alignments (MSA) EDGE - not scheduled
Rohan Kuber Implementation of SP-STAR algorithm EDGE - 12/03/12 (Wednesday) @ 4PM - skype
Tamer Kahveci Last modified: Wed Nov 28 14:56:06 EST 2012